PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.11G165300.2.p
Organism
Manihot esculenta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family E2F/DP
Protein Properties Length: 435aa    MW: 48620.6 Da    PI: 5.0824
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.11G165300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.71.7e-27143208171
              E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                          r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liekk kn+i+wkg
  Manes.11G165300.2.p 143 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 208
                          6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-29141210IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.72E-17143206IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013729.2E-35143208IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.4E-24145208IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146601.90E-47219325No hitNo description
SuperFamilySSF1440741.39E-33220325No hitNo description
PfamPF164212.7E-33224323IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MSNSQPPNSS TRLPQQNVTQ NPLKRQLPFS SMKPPFSAPG DYHRFSSEPR RVADHDVEAI  60
VVKPPPFKRK SDAADHEAES SEWNTSTGFT EVVNSPLQTP VSGKGGKAPK TSRLSKSSKS  120
GPQNAASHLG SPGSNLTLTG PCRYDSSLGL LTKKFINLIK HAEDGILDLN KAADTLEVQK  180
RRIYDITNVL EGIGLIEKKL KNRIQWKGLD VSRPGEADEN VSSLQAEVEN LNIEEHRLDD  240
RIREVQERLR DLSEEETNQK WLFVTEEDIK SLPCFQNETL IAIKAPHGTT LEVPDPDEAV  300
DYPQRRYRIV LRSTMGPIDV YLVSQFEEKF EEIHGVEPPK SYPSTSGFNE NLATTMVPGE  360
SREKEIEMLG QDDHRMCSDL NTSQDFVSGI MKIVPTDVDS DADYWLLSDA GVSITDMWRT  420
ERILLKVLHS VCLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-26141209574PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012075045.10.0PREDICTED: transcription factor E2FB isoform X2
SwissprotQ9FV711e-166E2FB_ARATH; Transcription factor E2FB
TrEMBLA0A067KKC20.0A0A067KKC2_JATCU; Uncharacterized protein
STRINGPOPTR_0009s16350.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.31e-167E2F transcription factor 1