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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.11G165300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | E2F/DP | ||||||||
Protein Properties | Length: 435aa MW: 48620.6 Da PI: 5.0824 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 86.7 | 1.7e-27 | 143 | 208 | 1 | 71 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 r+++sL+llt+kf++l++++e+gi++ln++a++L +v ++RRiYDi+NVLe+++liekk kn+i+wkg Manes.11G165300.2.p 143 RYDSSLGLLTKKFINLIKHAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKKLKNRIQWKG 208 6899******************************...99..****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 3.5E-29 | 141 | 210 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.72E-17 | 143 | 206 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 9.2E-35 | 143 | 208 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.4E-24 | 145 | 208 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
CDD | cd14660 | 1.90E-47 | 219 | 325 | No hit | No description |
SuperFamily | SSF144074 | 1.39E-33 | 220 | 325 | No hit | No description |
Pfam | PF16421 | 2.7E-33 | 224 | 323 | IPR032198 | E2F transcription factor, CC-MB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MSNSQPPNSS TRLPQQNVTQ NPLKRQLPFS SMKPPFSAPG DYHRFSSEPR RVADHDVEAI 60 VVKPPPFKRK SDAADHEAES SEWNTSTGFT EVVNSPLQTP VSGKGGKAPK TSRLSKSSKS 120 GPQNAASHLG SPGSNLTLTG PCRYDSSLGL LTKKFINLIK HAEDGILDLN KAADTLEVQK 180 RRIYDITNVL EGIGLIEKKL KNRIQWKGLD VSRPGEADEN VSSLQAEVEN LNIEEHRLDD 240 RIREVQERLR DLSEEETNQK WLFVTEEDIK SLPCFQNETL IAIKAPHGTT LEVPDPDEAV 300 DYPQRRYRIV LRSTMGPIDV YLVSQFEEKF EEIHGVEPPK SYPSTSGFNE NLATTMVPGE 360 SREKEIEMLG QDDHRMCSDL NTSQDFVSGI MKIVPTDVDS DADYWLLSDA GVSITDMWRT 420 ERILLKVLHS VCLI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 2e-26 | 141 | 209 | 5 | 74 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012075045.1 | 0.0 | PREDICTED: transcription factor E2FB isoform X2 | ||||
Swissprot | Q9FV71 | 1e-166 | E2FB_ARATH; Transcription factor E2FB | ||||
TrEMBL | A0A067KKC2 | 0.0 | A0A067KKC2_JATCU; Uncharacterized protein | ||||
STRING | POPTR_0009s16350.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.3 | 1e-167 | E2F transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Manes.11G165300.2.p |